Prediksi Komputasi Toxicity Nuclear Receptor Signalling Pathways dan Toxicity Targets Obat Ibuprofen Piconol Menggunakan Pendekatan In Silico
DOI:
https://doi.org/10.64595/jmpb.122026.735Keywords:
Ibuprofen Piconol; in silico; Toxicity Nuclear Receptor Signalling Pathways; Toxicity Targets; ProToxAbstract
Evaluasi toksisitas merupakan tahapan penting dalam pengembangan obat untuk mengidentifikasi potensi efek samping sejak tahap awal. Pendekatan in silico menawarkan metode yang cepat dan efisien dalam memprediksi profil keamanan suatu senyawa berdasarkan struktur kimianya. Penelitian ini bertujuan memprediksi Toxicity Nuclear Receptor Signalling Pathways dan Toxicity Targets dari Ibuprofen Piconol menggunakan platform ProTox. Penelitian ini merupakan studi deskriptif dengan pendekatan in silico. Struktur molekul Ibuprofen Piconol diperoleh dari PubChem dalam format SMILES dan dianalisis menggunakan ProTox. Parameter yang dievaluasi meliputi aktivitas terhadap reseptor nuklir Tox21 serta protein target yang berpotensi berkaitan dengan toksisitas. Seluruh parameter Toxicity Nuclear Receptor Signalling Pathways diprediksi inactive, meliputi AhR, AR, AR-LBD, Aromatase, ER, ER-LBD, dan PPAR-γ, dengan probabilitas 0,79–0,99. Analisis Toxicity Targets mengidentifikasi Amine Oxidase A (Average Pharmacophore Fit 44,54%) dan Prostaglandin G/H Synthase 1 (68,76%) dengan nilai Average Similarity Known Ligands sebesar 0%. Ibuprofen Piconol menunjukkan potensi toksisitas yang relatif rendah terhadap jalur pensinyalan reseptor nuklir. Target toksisitas yang teridentifikasi lebih mencerminkan mekanisme farmakologis dibandingkan mekanisme toksik, sehingga mendukung profil keamanan awal senyawa. Namun, validasi melalui penelitian in vitro dan in vivo masih diperlukan.
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References
1. Tutone M, Almerico AM. Computational strategies reshaping modern drug discovery. Molecules. 2026;31(2):200. https://doi.org/10.3390/molecules31020200
2. Ferreira FJN, Carneiro AS. AI-driven drug discovery: a comprehensive review. ACS Omega. 2025;10(23):23889–903. https://doi.org/10.1021/acsomega.5c00549
3. Schuhmacher A, Gassmann O, Hinder M, Kuss M, Zorzi P. Biopharma R&D faces productivity and attrition challenges: a quantitative analysis of pipeline trends. Drug Discov Today. 2025;30(3):104021. https://doi.org/10.1016/j.drudis.2025.104021
4. Ripa JD, Ali S, Field M, Smithson J, Wangchuk P. From AI-assisted in silico computational design to preclinical in vivo models: a multi-platform approach to small molecule anti-IBD drug discovery. Pharmaceuticals. 2025;18(10):1536. https://doi.org/10.3390/ph18101536
5. Vasava P, Pérez-Santín E, Rodríguez Solana R, et al. Toxicity prediction based on artificial intelligence: a review. Drug Discov Today. 2023;28(7):103372. https://doi.org/10.1016/j.drudis.2023.103372
6. Amorim AMB, Piochi LF, Gaspar AT, Preto AJ, Rosário-Ferreira N, Moreira IS. Advancing drug safety in drug development: bridging computational predictions for enhanced toxicity prediction. Chem Res Toxicol. 2024;37(6):827–49. https://doi.org/10.1021/acs.chemrestox.3c00352
7. Kuo DJ, Lin YJ, Hsiao SH, et al. Consideration of the root causes in candidate attrition during oncology drug development. Clin Pharmacol Drug Dev. 2024;13(9):952–60. https://doi.org/10.1002/cpdd.1464
8. Zhang J, Li H, Zhang Y, Huang J, Ren L, Zhang C, et al. Computational toxicology in drug discovery: applications of artificial intelligence in ADMET and toxicity prediction. Brief Bioinform. 2025;26(5):bbaf533. https://doi.org/10.1093/bib/bbaf533
9. Lee H, Kim J, Kim JW, Lee Y. Recent advances in AI-based toxicity prediction for drug discovery. Front Chem. 2025;13:1632046. https://doi.org/10.3389/fchem.2025.1632046
10. Banerjee P, Kemmler E, Dunkel M, Preissner R. ProTox 3.0: a webserver for the prediction of toxicity of chemicals. Nucleic Acids Res. 2024;52(W1):W513–20. https://doi.org/10.1093/nar/gkae303
11. Li Y, Yin L, Wang J, Chen H, Guo Y, Zhou Z, et al. Nuclear receptors in health and disease: signaling pathways, biological functions and pharmaceutical interventions. Signal Transduct Target Ther. 2025;10:228. https://doi.org/10.1038/s41392-025-02270-3
12. Rehman MU, Akhtar T, Ahmad A, Al-Abbasi FA, Kazmi I, Anwar F, et al. Safety implications of modulating nuclear receptors: a comprehensive analysis from non-clinical and clinical perspectives. Int J Mol Sci. 2024;25(14):7819. https://doi.org/10.3390/ijms25147819
13. Roman DL, Roman M, Isvoran A. Computational assessment of pharmacological profiles and toxicity of bioactive compounds: a comparative study using multiple in silico platforms. Toxics. 2024;12(9):621. https://doi.org/10.3390/toxics12090621
14. Jain S, Manganelli S, Gryshkova V, Rodrigues MA, Magarkar A. Methods in predictive toxicology 2023. Front Pharmacol. 2025;16:1556352. https://doi.org/10.3389/fphar.2025.1556352
15. Ru J, Sun H, Pan L, Xue Y, Wang J. In silico methods for drug-target interaction prediction. Cell Rep Methods. 2025;5(9):101432. https://doi.org/10.1016/j.crmeth.2025.101432
16. Bai H, Ma T, Ma R, Li J, Wang Y, Zhou P, et al. Machine learning-enabled drug-induced toxicity prediction. Adv Sci. 2025;12(22):e2413405. https://doi.org/10.1002/advs.202413405
17. Zhang J, Li H, Zhang Y, Huang J, Ren L, Zhang C, et al. Computational toxicology in drug discovery: applications of artificial intelligence in ADMET and toxicity prediction. Brief Bioinform. 2025;26(5):bbaf533. https://doi.org/10.1093/bib/bbaf533
18. Masarone S, Beckwith KV, Wilkinson MR, Tuli S, Lane A, Windsor S, et al. Advancing predictive toxicology: overcoming hurdles and shaping the future. Digit Discov. 2025;4:303–15. https://doi.org/10.1039/D4DD00257A
19. Amorim AMB, Piochi LF, Gaspar AT, Preto AJ, Rosário-Ferreira N, Moreira IS. Advancing drug safety in drug development: bridging computational predictions for enhanced toxicity prediction. Chem Res Toxicol. 2024;37(6):827–49. https://doi.org/10.1021/acs.chemrestox.3c00352
20. Banerjee P, Kemmler E, Dunkel M, Preissner R. ProTox 3.0: a webserver for the prediction of toxicity of chemicals. Nucleic Acids Res. 2024;52(W1):W513–20. https://doi.org/10.1093/nar/gkae303
21. Hämäläinen M, Lehtonen P, Saario E, Weckman A, Vuolteenaho K, Moilanen E. Anti-inflammatory and antifibrotic effects of ibuprofen in human dermal fibroblasts. Molecules. 2023;28(3):1175. https://doi.org/10.3390/molecules28031175
22. Roman DL, Roman M, Isvoran A. Computational assessment of pharmacological profiles and toxicity of bioactive compounds: a comparative study using multiple in silico platforms. Toxics. 2024;12(9):621. https://doi.org/10.3390/toxics12090621
23. Sadowski J, Sander T, Testa B. Physicochemical properties of drug candidates for topical skin treatment. Eur J Pharm Sci. 2024;194:106696. https://doi.org/10.1016/j.ejps.2024.106696
24. Idakwo G, Luo M, Chen M, Hong H, Zhang C. AI-based toxicity prediction in drug discovery: recent advances, challenges, and future perspectives. J Chem Inf Model. 2023;63(20):6198–211. https://doi.org/10.1021/acs.jcim.3c00200
25. Shareef J, Belagodu Sridhar S, Mohamed Saeed Z, Alsereidi AMR. Balancing pain relief and safety: gastrointestinal and cardiovascular risk assessment in nonsteroidal anti-inflammatory drug users. Pharmaceuticals. 2026;19(1):67. https://doi.org/10.3390/ph19010067
26. Tamura J, Terao T, Mori M, Nishimura K, Shinmen N, Arai H. Comprehensive analysis of gastrointestinal injury induced by nonsteroidal anti-inflammatory drugs using data from FDA Adverse Event Reporting System database. Pharmaceuticals. 2025;18(8):1204. https://doi.org/10.3390/ph18081204
27. Pelkonen O, Turpeinen M, Hakkola J. Inhibition and induction of human CYP enzymes: current status. Arch Toxicol. 2023;97(7):1727–98. https://doi.org/10.1007/s00204-023-03504-7
28. Flynn NR, Miller GP, Swamidass SJ. Advancements in computational studies of drug toxicity. Front Pharmacol. 2023;14:1230409. https://doi.org/10.3389/fphar.2023.1230409
29. Tsymbal A, Sotnikov A, Tkachenko V, Oliinyk Y, Kovalishyn V, Kopach M, et al. The role of machine learning in predictive toxicology: a review of current trends and future perspectives. Life Sci. 2025;374:123669. https://doi.org/10.1016/j.lfs.2025.123669
30. Fu L, Shi S, Yi J, Wang N, He Y, Wu Z, et al. ADMETlab 3.0: an updated comprehensive online ADMET prediction platform enhanced with broader coverage, improved performance, API functionality and decision support. Nucleic Acids Res. 2024;52(W1):W422–31. https://doi.org/10.1093/nar/gkae236
31. Madden JC, Pawar G, Cronin MTD, et al. Advancing human health risk assessment: the role of new approach methodologies. Front Toxicol. 2025;7:1632941. https://doi.org/10.3389/ftox.2025.1632941
32. Jain S, Manganelli S, Gryshkova V, Rodrigues MA, Magarkar A. Methods in predictive toxicology 2023. Front Pharmacol. 2025;16:1556352. https://doi.org/10.3389/fphar.2025.1556352
33. Wu L, Yan B, Han J, Li R, Xiao J, He S, et al. TOXRIC: a comprehensive database of toxicological data and benchmarks. Nucleic Acids Res. 2023;51(D1):D1432–45. https://doi.org/10.1093/nar/gkac1074
34. Lee H, Kim J, Kim JW, Lee Y. Recent advances in AI-based toxicity prediction for drug discovery. Front Chem. 2025;13:1632046. https://doi.org/10.3389/fchem.2025.1632046
35. Vasava P, Pérez-Santín E, Rodríguez Solana R, et al. Toxicity prediction based on artificial intelligence: a review. Drug Discov Today. 2023;28(7):103372. https://doi.org/10.1016/j.drudis.2023.103372
36. Rehman MU, Akhtar T, Ahmad A, Al-Abbasi FA, Kazmi I, Anwar F, et al. Safety implications of modulating nuclear receptors: a comprehensive analysis from non-clinical and clinical perspectives. Int J Mol Sci. 2024;25(14):7819. https://doi.org/10.3390/ijms25147819
37. Li Y, Yin L, Wang J, Chen H, Guo Y, Zhou Z, et al. Nuclear receptors in health and disease: signaling pathways, biological functions and pharmaceutical interventions. Signal Transduct Target Ther. 2025;10:228. https://doi.org/10.1038/s41392-025-02270-3
38. Gianquinto E, Aldeghi M, Cole DJ, Guedes RC, Wade RC, Cavalli A, et al. Toward integrative predictive toxicology: advanced methods for drug toxicity and safety prediction. WIREs Comput Mol Sci. 2026;16(1):e70065. https://doi.org/10.1002/wcms.70065
39. Bisht A, Avula SK, Sharma A, et al. QSAR-based virtual screening and machine learning for prediction of chemical toxicity: a comprehensive review. RSC Adv. 2024;14(12):8230–50. https://doi.org/10.1039/D3RA08230J
40. Marin DE, Taranu I. Using in silico approach for metabolomic and toxicity prediction of alternariol. Toxins. 2023;15(7):421. https://doi.org/10.3390/toxins15070421
41. Braga RC, Alves VM, Muratov EN, Andrade CH, Tropsha A. Machine learning in toxicological sciences: opportunities for assessing drug toxicity. Front Drug Discov. 2024;4:1336025. https://doi.org/10.3389/fddsv.2024.1336025
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